A 4 year LKAS-funded PhD position is available to work with me, Simon Babayan, Roman Biek, Richard Orton, Chris Bunn, Emma Thomson and Ke Yuan. The project will combines machine learning, bioinformatics, genomics and social science to develop and implement data driven tools that can guide outbreak response. More information is available here
International applicants are welcome to apply for this scheme.
The deadline for applying in 12 January. Email me first if you are considering applying.
The University of Glasgow will host EEID2018
29 May – 1 June 2018
Website is live!
New Grant from The Royal Society!
The Royal Society just awarded us a one-year Challenge Grant of £96K to study strategies for topical vaccination of bats against viruses. The grant forms new collaborations with Tonie Rocke and Jorge Osorio from USGS-NWHC and the University of Wisconsin, respectively and strengthens existing collaborations with Nestor Falcon and Carlos Shiva from the Cayetano Heredia University Vet School and William Valderrama from RENACE in Peru. We’ll be pairing biomarker experiments in wild bats with statistical and mathematical models to evaluate if and how vaccination could be an effective tool for vampire bat rabies prevention and control. This project represents an important step to ev
PhD studentships available to work at the MRC-University of Glasgow Centre for Virus Research
If you’re interested in joining the group as a PhD student, have a look at the CVR PhD Program. There are eligibility requirements related to nationality and residency, but if you qualify and are keen to apply, feel free to contact me first with a description of your experience and research interests. Applications are due January 6 2017.
Contagious Thinking Podcast and article from CVR on vampire bat rabies
From Connor Bamford and Josie Bellhouse: “For the Contagious Thinking podcast #12, we spoke with University of Glasgow’s Dr Daniel Streicker – a Wellcome Trust fellow and 2015 National Geographic Emerging Explorer – and Dr Julio Benavides – a postdoc in Daniel’s lab and recent recipient of the George Baer Latin American Investigator Award from the international group, ‘Rabies in the Americas’, about their work on trying to understand the spread of vampire bat rabies in Peru.”
Listen here: https://soundcloud.com/user-28288327/rabies-riding-the-wave-to-the-pacific-coast
Or read the blog post: http://cvr.academicblogs.co.uk/rabies-riding-the-wave-to-the-pacific-coast/
Genetic forecasting of male-driven invasions of vampire bat rabies
Pathogen invasions across landscapes are increasingly common. From Zika and Ebola viruses in humans to White nose syndrome and Chytrid fungus in wildlife, these invasions have profound importance, but are notoriously difficult to predict. We recently showed that rabies virus – long considered an endemic virus of vampire bats – is actually an emerging virus, spreading across landscapes in highly predictable wavefronts and causing major losses to livestock and human health as the virus hits large, historically rabies-free bat populations. In our current paper, now out in PNAS, we use genetic data from vampire bats and rabies viruses to show that these invasions are likely driven by the dispersal of highly mobile male bats, not by more sedentary females. Moreover, genetic inferences of bat population structure provided a roadmap of how rabies could spread across the landscape through patterns of bat movement. This viral invasion forecast was validated by an independent dataset on livestock rabies mortality. If invasions continue at the rates and trajectories that we predict, vampire bat rabies could invade the Pacific coast of South America for the first time in recorded history as soon as 2020, which would have serious implications for livestock management practices across several countries. Now work is needed to assess the value of rabies control strategies that target male bats and to figure out what triggers invasions to new populations in the first place. Stay tuned.
Vampire bat rabies free areas on the Pacific coast of Peru might soon become infected as bat populations become more connected, allowing rabies to spread. Photo: Streicker
Some nice press on this paper from:
NPR, NSF, University of Georgia & University of Glasgow
Streicker, D.G., Winternitz, J., Satterfield, D., Condori-Condori, R.E., Broos, A., Tello, C., Recuenco, S., Velasco-Villa, A., Altizer, S., Valderrama, W. Host-pathogen evolutionary signatures reveal dynamics and future invasions of vampire bat rabies (2016) Proceedings of the National Academy of Sciences of the USA DOI: 10.1073/pnas.1606587113
Predicting advancing wavefronts of vampire bat rabies
Our latest set of analyses of data from the Ministry of Agriculture of Peru, together with our own questionnaire data, show that rabies continues to spread to the fringes of the vampire bat distribution in surprisingly constant and predictable wave-like expansions. The ability to forecast when and where rabies will appear next provides a tantalizing opportunity to develop interventions like vaccination of humans and livestock (or perhaps even the bats themselves) before rabies arrives to new regions. Hopefully this puts us one step closer to preventative rather than reactive management of vampire bat rabies.
Forecasting traveling waves of vampire bat rabies using simple landscape-adjusted linear regression models. Pie charts show the percentages of farms reporting bat bites (green), indicating the presence of vampire bats ahead of wavefronts. Blue and red points are the locations of rabies outbreaks in livestock.
The paper is published free online at Proceedings of the Royal Society B.
Julio and I also wrote a short piece in The Conversation describing the results of this analysis against a broader context of vampire bat rabies in Latin America.
Benavides, J., Valderrama, W., & Streicker, D.G. Spatial expansions and travelling waves of rabies in vampire bats (2016) Proceedings of the Royal Society B. DOI: 10.1098/rspb.2016.0328
Land use, vampire bat feeding and rabies
A stable isotope analysis of bat hair, stomach contents and possible prey species showed some expected things, like that bats specialize on livestock prey when they don’t have any other options. But there were also some surprises. For example, on the coast of Peru vampire bats in the same colonies fed on very food resources spanning primary consumers to top predators. Similarly, in the Amazon rainforest, we found evidence of individuals that fed mostly or exclusively on livestock living next to individuals that fed mostly on wildlife. This led to some of the largest within-population variability in carbon and nitrogen stable isotopes ever recorded in animals, suggesting that when it comes to feeding, these bats have personality and stick to what they know. Another surprise was that the diversity of dietary strategies tended to decline with the local availability of livestock, diets were most diverse in places where there were some livestock and some wildlife available – these were also the kind of places where we found bats feeding on people. But, once livestock became abundant, bats seemed to switched entirely to this relatively easy prey source. In the Amazon, this seemed to be a good thing for human health: bat bites on people were common in places without livestock but totally absent where bats were specializing on domestic prey. All of this is interesting from a disease transmission standpoint because as land use change and human behavior alter bat feeding behavior, they also alter which species are at risk for rabies infection. Next up, we will conduct genetic analysis of bat blood meals to find out exactly which species are bitten and Dan will investigate whether dietary differences among bat colonies affects bat immunity and infection.
The paper is published free online at Journal of Applied Ecology.
Streicker, D.G. & Allgeier, J.E. From food web to disease ecology: foraging choices of vampire bats in diverse landscapes (2016) Journal of Applied Ecology. DOI: 10.1111/1365-2664.12690
2 new grants this week to study infectious disease dynamics in vampire bats
NSF Dissertation Improvement Grant: “Consequences of resource heterogeneity for immune defense, connectivity, and rabies dynamics in vampire bats” to Dan Becker
Dan Becker was awarded $19k from the US National Science for expanding his work on how resource provisioning affects health and disease transmission in vampire bats. The new grant will allow Dan to develop new studies focusing on how livestock intensification in Latin America affects antiviral immunity, bat population genetic structure and the spread of rabies. Collaborators are Daniel Streicker and Sonia Altizer.
CONCYTEC Basic Research Grant: “The role of the vampire bat in the transmission of bacteria resistant to antibiotics used in humans and livestock”
A new grant from the Peruvian Council of Science, Technology and Technological Innovation and the has awarded our team, composed of researchers from the University of Glasgow and Cayetano Heredia University in Lima (UPCH), Peru a grant of S/.400,000 (= £80,000) to study whether antibiotic resistant bacteria are transmitted between vampire bats and livestock. Collaborators are Julio Benavides and Daniel Streicker (Glasgow) and Carlos Shiva and Nestor Falcon (UPCH).
New causes of mass mortality in modern bats
By reviewing the literature on causes of mass mortality in bats from 1790-2015, we found changes in the reasons that bats are dying in large numbers. While in the past, intentional persecution (killing, poisoning etc.) was a big factor, collisions with wind turbines and the disease white-nose syndrome in North America now lead the reported causes of mass death in bats. Interestingly, we found very little evidence for other viral or bacterial diseases causing large die-offs.
The absence of viral or bacterial infectious diseases associated with die offs is somewhat surprising given that bats often live in dense aggregations which should be ideal for disease spread. So, is disease-induced mortality really uncommon in bats? I think there are a few possibilities. First, perhaps many bat infections occur endemically at low prevalence rather than in epidemics that cause large scale die offs? If that were the case, bats could be dying from viral or bacterial infections, but since deaths occur over months or years rather than days, we fail to take notice. Rabies virus is a good example there – no die offs, but individuals certainly die of infection. On the other hand, could bats be somehow “special” in not actually showing disease at the individual-host level? This is commonly argued for other viruses like Nipah, Hendra and Ebola, where it is suggested that exceptional immune systems or ancient co-evolved relationships with viruses could protect bats at the individual level in a way that is somehow different from other host species.
Teasing apart these explanations requires a lot of work. We need long term monitoring to look at sublethal effects of infections on bats and longer term effects of infection on lifespan and we need tools to be able to actually measure the health of these bats beyond very crude measures of alive, dead or nearly dead in the field. We need experimental infection studies that replicate natural conditions of exposure and infection. All of these things are costly, but necessary if we are to fully understand bat mortality and the relationship between bats and their natural pathogens.
O’Shea, T., Cryan, P., Hayman, D., Plowright, R., Streicker, D.G. (2016) Multiple mortality events in bats: a global review Mammal Review DOI: 10.1111/mam.12064
Check out the USGS Press release for this paper here